[System.Reflection.Assembly]::LoadFrom("C:\Program Files\Windows Server\Bin\Wssg.Web.DomainManagerObjectModel.dll")
$CertMgr = New-Object Microsoft.WindowsServerSolutions.RemoteAccess.Domains.DomainCertificateManager
$certfile = Read-Host "Enter path to certificate PFX file"
$password = Read-Host "Enter Password to PFX file" -AsSecureString
$CertMgr.ConfigureCertificateFromFile($certfile, $password)
Please also review this blog post - http://blogs.technet.com/b/sbs/archive/2011/08/04/how-to-install-your-existing-certificate-into-sbs-essentials.aspx
What if my domain name is provided by GoDaddy as well as my cert (Domain name set at GoDaddy before running wizard)?
Yves ask in the www.sbsessentialsforum.com not here.