Hello Jeff,
Wuauclt.exe is the AutoUpdate Client of Windows Update and is used to check for available updates. When SCCM deploy updates to the clients, client system call the
WUA to install them.
Msiexec.exe belongs to the Windows Installer Component and is used to install MSI (Windows Installer package) and MSP (Windows Installer patch) packages, While most of Windows Update packages are MSU or CAB.
Hope my answer could help you and look forward to your feedback.
Best Regards,
Ray
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