It's worth using the Search Forums box at the top of the page or your favourite search engine to see if someone has already attempted these application; however I can answer some of them:
Microsoft Office Visio Standard 2003, yes
VMware Infrastructure Client 2.5; I think this uses COM+ so no but its worth sequencing to find out
Microsoft Office Access 2003 SP3, yes
Microsoft Operations Manager 2005 5.0.2749.0, you should be able to sequence the console
Windows Server 2003 Administration Tools Pack 5.2.3790.1830, no
RSA Authentication Manager 6.1.2, you should be able to sequence the console
Microsoft Silverlight (integrated with IE), yes
Microsoft SQL Server 2008, you should be able to sequence the console but not the database engine
Mozilla Firefox 3.5.1, yes
Microsoft Office Project Standard 2003, yes
Autodesk DWG TrueView 17.0.54.190, yes
Acro CutePDF, no
Adobe Reader 9.3, yes
Microsoft Office Standard Edition 2003, yes
WinZip 10.0, yes
Lotus Notes 7.0.2, yes
Lotus Notes 8.5.1, yes
Business Objects XI Full Client, yes
It's worth reading the App-V 4.6 Sequencing Guide to get an idea of what can and can't be sequenced. See page 15 for a list of things that can't be sequenced:
http://download.microsoft.com/download/F/7/8/F784A197-73BE-48FF-83DA-4102C05A6D44/App-46_Sequencing_Guide_Final.docx
I also have a list of App-V recipes here that may include some of your applications:
http://blog.stealthpuppy.com/appvrecipes
