Hi,
Is there a name resolution issue in your network? Can SCE server connect to the SCOM with FQDN?
If the above is not your scenario, check if duplicate SPNs cause this issue, use following query command:
ldifde -f C:\*.txt -t 3268 -d dc=domain,dc=com -l serviceprincipalname -r (serviceprincipalname=*) -p subtree
In the above command, replace DC=domain,DC=com with the DN of the domain
If you find and remove duplicate SPNs, use setspn -D to delete all of the HealthService SPNs. Then restart OpsMgr Health Service on the management server and let it register its SPNs with the correct logon account. For example:
Using the example above, the setspn -D commands would be as follow:
setspn -D MSOMHSvc/OPSMGRFA opsmgrfa
setspn -D MSOMHSvc/OPSMGRFA.ChildDomainA.ForestA.local opsmgrfa
Note: you can find setspn.exe from Windows Server 2003 support tools.
More information:
http://forums.microsoft.com/TechNet/ShowPost.aspx?PostID=1725806&SiteID=17
Hope this helps.