I am assuming the message you are seeing is in the event log and goes something like "A storage device in .... loaded but has a different version from the server. ... To fix this problem, upgrade the integration services."
For SLES the integration services come from the directly from the kernel coming from SUSE. The warning message you are seeing is because the Linux Integration Services versioning is different from the Windows Integration Services. You can ignore this warning.
This particular warning message is fixed in Windows Server 2016 Hyper-V.
Joshua R. Poulson, Program Manager, Microsoft Open Source Technology Center